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Timetable (MTGW04)

Evaluation workshop of the first CAMI challenge

Tuesday 10th May 2016 to Friday 13th May 2016

Wednesday 11th May 2016
09:00 to 09:30 Registration
09:30 to 09:45 Welcome by Alice McHardy (Helmholtz Centre for Infection Research, Germany)
09:45 to 10:30 Andreas Bremges (Helmholtz Centre for Infection Research)
CAMI challenge data & simulation pipeline
INI 1
10:30 to 11:00 Morning Coffee
11:00 to 11:45 Peter Belmann
A framework for the continuous Assessment of Metagenome Interpretation
INI 1
11:45 to 12:30 Alexander Sczyrba (Universität Bielefeld)
An overview of the assembly results
INI 1
12:30 to 13:30 Lunch Break
13:30 to 14:15 Alice McHardy (Helmholtz Centre for Infection Research)
An overview of the binning results
INI 1
14:15 to 15:00 David Koslicki (Oregon State University)
An overview of the profiling results
INI 1
15:00 to 15:30 Afternoon Tea
15:30 to 18:00 Activities within working groups INI 1
18:00 to 19:00 Welcome Wine Reception
Thursday 12th May 2016
09:00 to 09:20 Alice McHardy (Helmholtz Centre for Infection Research); Alexander Sczyrba (Universität Bielefeld)
Future focus of CAMI challenges
INI 1
09:20 to 09:50 Aaron Darling (University of Technology Sydney)
Resolving genomes from metagenomic strain mixtures with 3C & Hi-C. Is it possible?
INI 1
09:50 to 10:20 Niranjan Nagarajan (Genome Institute of Singapore)
Long-read and hybrid metagenomic assembly: tradeoffs and detections limits
INI 1
10:20 to 10:50 Morning Coffee
10:50 to 11:20 Yu-Wei Wu (University of California)
Establishing benchmark data sets for further development of unsupervised binning tools
INI 1
11:20 to 11:35 Phil Blood
Computational Infrastructure to Support CAMI
INI 1
11:35 to 12:30 Activities within the working groups INI 1
12:30 to 13:30 Lunch Break
13:30 to 15:00 Activities within the working groups INI 1
15:00 to 15:30 Afternoon Tea
15:30 to 16:00 Todd Treangen
Challenges in pathogen detection with metagenome classification techniques
INI 1
16:00 to 17:00 Activities within the working groups INI 1
Friday 13th May 2016
09:00 to 10:30 Activities within the working groups INI 1
10:30 to 11:00 Morning Coffee
11:00 to 12:30 Activities within the working groups INI 1
University of Cambridge Research Councils UK
    Clay Mathematics Institute London Mathematical Society NM Rothschild and Sons