skip to content
 

Seminars (SDB)

Videos and presentation materials from other INI events are also available.

Search seminar archive

Event When Speaker Title Presentation Material
SDB 12th January 2016
15:00 to 16:00
Ulrich Dobramysl Role and dynamics of cytoskeletal actin bundles
SDB 13th January 2016
15:00 to 16:00
Karen Lipkow Cellular Systems Biology of Chromosome Dynamics
SDBW01 18th January 2016
11:45 to 12:30
Radek Erban, David Holcman, Samuel Isaacson, Konstantinos Zygalakis Eight Open Problems
SDBW01 18th January 2016
13:30 to 14:15
Jasmine Foo Field cancerization and recurrence in head and neck squamous cell carcinoma
SDBW01 18th January 2016
14:15 to 15:00
Blerta Shtylla Mathematical modeling of cellular nano machines
SDBW01 18th January 2016
15:30 to 16:15
Des Higham Efficiency of Stochastic Simulations
SDBW01 19th January 2016
09:00 to 09:45
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
09:45 to 10:30
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
11:00 to 11:45
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
11:45 to 12:30
Darren Wilkinson Linking stochastic dynamic biological models to data: Bayesian inference for parameters and structure
SDBW01 19th January 2016
13:30 to 14:15
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
14:15 to 15:00
Linda Petzold A Spatial Stochastic Model of Cell Polarization
SDBW01 19th January 2016
15:30 to 16:15
Peter Swain Identifying sources of variation in biochemical networks
SDBW01 20th January 2016
09:00 to 09:45
Johan Paulsson Exploiting single-cell fluctuations
SDBW01 20th January 2016
09:45 to 10:30
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 20th January 2016
11:00 to 11:45
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 20th January 2016
11:45 to 12:30
Raymond Goldstein The Stochastic Nonlinear Dynamics of Eukaryotic Flagella
SDBW01 20th January 2016
13:30 to 14:15
Christof Schuette Modelling Cellular Reaction-Diffusion Kinetics
SDBW01 20th January 2016
14:15 to 15:00
Ben Simons Tracing the cellular basis of epidermal maintenance and cancer
SDBW01 20th January 2016
15:30 to 16:15
Scott McKinley Anomalous Diffusion and Random Encounters in Biological Fluids
SDBW01 21st January 2016
09:00 to 09:45
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 21st January 2016
09:45 to 10:30
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 21st January 2016
11:00 to 11:45
David Holcman Advanced Lecture1 (Part I): Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes
SDBW01 21st January 2016
11:45 to 12:30
Rachel Kuske Noise-generated mixed-mode oscillations
SDBW01 21st January 2016
13:30 to 14:15
Ruth Baker Multi-level Monte Carlo: adaptive algorithms and distribution estimation
SDBW01 21st January 2016
14:15 to 15:00
Neil Dalchau Performing computation with DNA
SDBW01 21st January 2016
15:30 to 16:15
Stefan Klumpp Aspects of bacterial persistence
SDBW01 22nd January 2016
09:00 to 09:45
David Holcman Advanced Lecture 1 (Part II): Narrow escape theory, first passage time to a small hole: analytical theory of chemical reactions
SDBW01 22nd January 2016
09:45 to 10:30
David Holcman Advanced Lecture 2-3: Narrow escape theory application to the analysis of super-resolution single particle trajectories,
SDBW01 22nd January 2016
11:00 to 11:45
David Holcman Tutorial C: Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes
SDBW01 22nd January 2016
11:45 to 12:30
Mike Giles Multilevel Monte Carlo methods
SDB 26th January 2016
15:00 to 16:00
Grant Lythe Stochastic modelling and immunology
SDB 27th January 2016
15:00 to 16:00
Steve Andrews Open problems in stochastic cell biology: information transfer, macromolecular crowding, and filament simulation
SDB 29th January 2016
14:30 to 17:00
David Holcman Lecture 1: Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 2nd February 2016
15:00 to 16:00
Pietro Cicuta Subdiffusive fluctuations in bacterial chromosomes
SDB 3rd February 2016
15:00 to 16:00
Konstantinos Zygalakis Hybrid modelling of stochastic chemical kinetics
SDB 5th February 2016
14:30 to 17:00
David Holcman Lecture 2: Introduction to the stochastic integral and Ito calculus,
SDB 9th February 2016
15:00 to 16:00
Yongzheng Sun Influence of noise and time delay on the collective behavior of self-propelled particles system
SDB 10th February 2016
15:00 to 16:00
Bence Mélykúti Equilibrium distributions of simple biochemical reaction systems for time-scale separation in stochastic reaction networks
SDB 12th February 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 16th February 2016
15:00 to 16:00
Framework for Construction of Caricature Chemical Reaction Systems
SDB 17th February 2016
15:00 to 16:00
Omer Dushek A novel biophysical method for the study of tethered signalling reactions
SDB 23rd February 2016
15:00 to 16:00
Grant Lythe Stochastic modelling and immunology
SDB 24th February 2016
15:00 to 16:00
Krasimira Tsaneva Modelling gonadotrophin-releasing hormone signalling: dynamics, noise and reliability
SDB 26th February 2016
14:30 to 17:00
David Holcman Lecture 4
SDB 4th March 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 8th March 2016
15:00 to 16:00
Mark Flegg Stochastic simulation of high order molecular interactions with spatial resolution and individual molecule detail: A generalised Smoluchowski theory
SDB 9th March 2016
15:00 to 16:00
Andreas Hellander PyURDME, MOLNs and StochSS — from new algorithms for spatial stochastic simulation to large-scale distributed computational experiments in “the cloud"
SDB 11th March 2016
14:30 to 17:00
David Holcman Lecture 7: (U. of Cambridge): Additive property of the MFPT, Fokker-Planck equation with a killing term and a Non-Poissonnian escape process
SDB 15th March 2016
15:00 to 16:00
Shuohao Liao Tensor Methods for Parameter Estimation and Bifurcation Analysis of Stochastic Reaction Networks
SDB 16th March 2016
15:00 to 16:00
Romain Yvinec Stochastic coagulation-fragmentation models for the study of protein aggregation phenomena
SDB 18th March 2016
14:30 to 17:00
David Holcman Lecture 7: (U. of Cambridge): Additive property of the MFPT, Fokker-Planck with a killing term, Non-Poissonnian escape
SDB 21st March 2016
14:00 to 15:00
Stefan Hellander Reaction rates for nearest-neighbor reactions in the reaction-diffusion master equation
SDB 22nd March 2016
15:00 to 16:00
Julius Kirkegaard Stochastic Aspects of Choanoflagellates
SDB 29th March 2016
15:00 to 16:00
Peter Roland Kramer Stochastic Fluctuations in Suspensions of Swimming Microorganisms
SDB 30th March 2016
15:00 to 16:00
Sandro Azaele Stochastic Modeling of Species-Rich Ecosystems
SDBW03 4th April 2016
09:30 to 10:15
Thomas Kurtz Approximations for Markov chain models
SDBW03 4th April 2016
10:15 to 11:00
James Faeder Towards large scale models of biochemical networks
SDBW03 4th April 2016
11:30 to 12:15
Simon Cotter A constrained approach to the simulation and analysis of stochastic multiscale chemical kinetics
SDBW03 4th April 2016
14:00 to 14:45
Raul Fidel Tempone Efficient Simulation and Inference for Stochastic Reaction Networks
SDBW03 4th April 2016
14:45 to 15:30
Erkki Somersalo tba
SDBW03 5th April 2016
09:00 to 09:45
Rosalind Allen Inherent variability in the kinetics of amyloid fibril formation
SDBW03 5th April 2016
09:45 to 10:30
Muruhan Rathinam Analysis of Monte Carlo estimators for parametric sensitivities in stochastic chemical kinetics
SDBW03 5th April 2016
11:00 to 11:45
David Doty "No We Can't": Impossibility of efficient leader election by chemical reactions
SDBW03 5th April 2016
11:45 to 12:30
Jay Newby First-passage time to clear the way for receptor-ligand binding in a crowded environment
SDBW03 5th April 2016
14:00 to 14:45
John Albeck Linking dynamic signaling events within the same cell
SDBW03 5th April 2016
14:45 to 15:30
Aleksandra Walczak tba
SDBW03 5th April 2016
16:00 to 16:45
Vahid Shahrezaei Inference of size dependence of transcription parameters from single cell data using multi-scale models of gene expression
SDBW03 6th April 2016
09:00 to 09:45
Omer Dushek Cellular signalling in T cells is captured by a tractable modular phenotypic model
SDBW03 6th April 2016
09:45 to 10:30
Eric Deeds tba
SDBW03 6th April 2016
11:00 to 11:45
Carlos Lopez Intracellular signaling processes and cell decisions using stochastic algorithms
SDBW03 6th April 2016
11:45 to 12:30
Tomas Vejchodsky Tensor methods for higher-dimensional Fokker-Planck equation
SDBW03 7th April 2016
09:00 to 09:45
Pieter Rein ten Wolde Fundamental limits to transcriptional regulatory control
SDBW03 7th April 2016
09:45 to 10:30
Andrew Duncan Hybrid modelling of stochastic chemical kinetics
SDBW03 7th April 2016
11:00 to 11:45
Kevin Burrage Sampling Methods for Exploring Between Subject Variability in Cardiac Electrophysiology Experiments
SDBW03 7th April 2016
11:45 to 12:30
Vikram Sunkara Insights into the dynamics of Hybrid Methods through a range of biological examples. A hands on approach
SDBW03 7th April 2016
14:00 to 14:45
Carmen Molina-Paris A stochastic story of two receptors and two ligands
SDBW03 7th April 2016
14:45 to 15:30
Ankit Gupta Stability properties of stochastic biomolecular reaction networks: Analysis and Applications
SDBW03 7th April 2016
16:00 to 16:45
Mustafa Khammash Subtle is the noise, but malicious it is not: dynamic exploits of intracellular noise
SDBW03 8th April 2016
09:00 to 09:45
Yiannis Kaznessis Closure Scheme for Chemical Master Equations - Is the Gibbs entropy maximum for stochastic reaction networks at steady state?
SDBW03 8th April 2016
09:45 to 10:30
Darren Wilkinson Scalable algorithms for Markov process parameter inference
SDBW03 8th April 2016
11:00 to 11:45
Christian Ray Lineage as a conception of space in compartmental stochastic processes across cellular populations
SDBW03 8th April 2016
11:45 to 12:30
Ramon Grima The system-size expansion of the chemical master equation: developments in the past 5 years
SDB 12th April 2016
15:00 to 16:00
Yiannis Kaznessis Multiscale Models for New Antibiotic Technologies
SDB 13th April 2016
15:00 to 16:00
James Rothman On the Structural Biochemical Mechanism of Synaptic Neurotransmission in the Brain
SDB 15th April 2016
14:30 to 17:00
David Holcman Lecture 8: (U. of Cambridge): Oscillatory escape: a Non-Poissonnian escape process
SDB 19th April 2016
15:00 to 16:00
Bob Eisenberg Mathematics and physiology
SDB 22nd April 2016
14:30 to 17:00
David Holcman Lecture 9: (U. of Cambridge): Oscillatory escape: a Non-Poissonnian escape process
SDB 26th April 2016
15:00 to 16:00
André Leier The use of delays in modelling and simulation of biochemical reaction systems and exact model reduction
SDB 27th April 2016
15:00 to 16:00
Jay Newby Metastable dynamics: rare events in cell biology
SDB 28th April 2016
11:00 to 12:00
Colin Gillespie Efficient construction of optimal designs for stochastic kinetic models
SDB 29th April 2016
14:30 to 17:00
David Holcman Lecture 10: (U. of Cambridge): Escape through a cusp. Applications to diffusion in a crowded membrane
SDB 4th May 2016
15:00 to 16:00
Chuan Xue Multiscale Modeling of Axonal Cytoskeleton Dynamics in Disease
SDB 5th May 2016
16:00 to 17:00
Tatiana T Marquez Lago Spatial stochastic models of cell polarity and personalized medicine
SDB 6th May 2016
14:30 to 17:00
David Holcman Lecture 11: (U. of Cambridge): statistics and analysis of super-resolution Single Particle trajectories.
SDB 10th May 2016
15:00 to 16:00
German A. Enciso Absolute robustness in deterministic and stochastic chemical reaction networks
SDB 11th May 2016
10:00 to 13:00
Steve Andrews Smoldyn Tutorial
SDB 11th May 2016
15:00 to 16:00
Ralf Metzler Anomalous diffusion in biological membranes and their mathematical description
SDB 13th May 2016
11:00 to 12:00
John Fricks Time Series Analysis of Diffusion with Transient Binding
SDB 13th May 2016
14:30 to 15:30
David Holcman Lecture 12: (U. of Cambridge): Stochastic chemical reactions: modelling and analysis
SDB 17th May 2016
15:00 to 16:00
Jürgen Reingruber Modeling and stochastic analysis of autoregulation of the Krox20 transcription factor driving cellular diversification and hindbrain patterning
SDB 18th May 2016
15:00 to 16:00
Kevin Burrage What we have been doing while at INI for the last 5 weeks: a mathematical study on anomalous diffusion
SDB 19th May 2016
16:00 to 17:00
Daniel Coombs Particle tracking to elucidate cell surface receptor motion and signalling
SDB 20th May 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 25th May 2016
15:00 to 16:00
John Tyson Getting Things Right in a Noisy Milieu: Stochastic Models of Cell Cycle Dynamics in Budding Yeast and Bacteria
SDB 27th May 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 31st May 2016
15:00 to 16:00
Stephen Smith Four arguments against the reaction-diffusion master equation (and one in its favour).
SDB 1st June 2016
15:00 to 16:00
Garegin Papoian Stochastic Mechanochemistry of the Eukaryotic Cytoskeleton
SDB 6th June 2016
15:00 to 16:00
Vahid Shahrezaei Multi-scale modelling of stochastic gene expression
SDB 7th June 2016
15:00 to 16:00
André Leier Stochastic membrane processes in biomedicine
SDB 8th June 2016
15:00 to 16:00
David Schnoerr Cox process representation and inference for stochastic reaction-diffusion processes
SDB 9th June 2016
16:00 to 17:00
Tuomas Knowles Kinetics of filamentous protein self-assembly
SDB 10th June 2016
11:00 to 12:00
Jonathan Mattingly Scaling limits of a model for selection at two scales Joint with Shishi Luo
SDB 13th June 2016
15:00 to 16:00
Justine Dattani Stochastic models of gene transcription with upstream drives: Exact solution and sample path characterisation
SDB 14th June 2016
11:00 to 12:00
Ben O'Shaughnessy Mechanics of cell division by the actomyosin contractile ring
SDB 14th June 2016
15:00 to 16:00
Markos A. Katsoulakis Path-space information metrics for uncertainty quantification and coarse-graining of molecular systems
SDB 15th June 2016
15:00 to 16:00
Kevin Lin An analysis of implicit samplers in the small-noise limit
SDB 16th June 2016
11:00 to 12:00
Bence Mélykúti Cross-contamination rate estimation for digital PCR in lab-on-a-chip microfluidic devices
SDB 17th June 2016
14:15 to 17:00
David Holcman Polymer model, mean looping time and interpretation of Hi-C data (Enounter frequencies data)
SDBW04 20th June 2016
09:45 to 10:30
Daniel Coombs Interpretation and modelling with super-resolution microscopy
SDBW04 20th June 2016
11:00 to 11:45
Nathanael Hoze Recovering a stochastic process from super-resolution noisy ensembles of single particle trajectories
SDBW04 20th June 2016
11:45 to 12:30
Maria Bruna Diffusion of finite-size particles and application to heterogeneous domains
SDBW04 20th June 2016
14:00 to 14:45
Stefan Engblom Stability and strong convergence in multiscale methods for spatial stochastic kinetics
SDBW04 20th June 2016
14:45 to 15:30
Radek Erban From molecular dynamics to Brownian dynamics
SDBW04 20th June 2016
16:00 to 16:45
Ramon Grima Exact and approximate solutions for spatial stochastic models of biochemical systems
SDBW04 21st June 2016
09:00 to 09:45
Aleksandar Donev Fast Reactive Brownian Dynamics
SDBW04 21st June 2016
09:45 to 10:30
Konstantinos Spiliopoulos Metastability and Monte Carlo Methods for Multiscale Problems
SDBW04 21st June 2016
11:00 to 11:45
Frank Noe Interacting-Particle Reaction-Diffusion Simulations: Endocytosis
SDBW04 21st June 2016
11:45 to 12:30
Avrama Blackwell Computationally efficient simulation of signaling pathways underlying synaptic plasticity
SDBW04 21st June 2016
14:00 to 14:45
Andrew Rutenberg Models of Microtubule Acetylation
SDBW04 21st June 2016
14:45 to 15:30
Kevin Sanft Spatial simulation and analysis of actin filament dynamics and wave propagation
SDBW04 21st June 2016
16:00 to 17:00
Yannis Kevrekidis Rothschild Lecture: Mathematics for data-driven modeling - The science of crystal balls
SDBW04 22nd June 2016
09:00 to 09:45
Tom Chou Path integral-based Bayesian inference of bond energy and mobility
SDBW04 22nd June 2016
09:45 to 10:30
Zaida Luthey-Schulten Simulations of Cellular Processes: From Single Cells to Colonies
SDBW04 22nd June 2016
11:00 to 11:45
Kit Yates Developing PDE-compartment hybrid frameworks for modeling stochastic reaction-diffusion processes
SDBW04 22nd June 2016
11:45 to 12:30
Erik De Schutter Accurate Reaction-Diffusion Operator Splitting on Tetrahedral Meshes for Parallel Stochastic Molecular Simulations
SDBW04 23rd June 2016
09:00 to 09:45
Jun Allard Clustering of cell surface receptors: Simulating the mesoscale between reaction-diffusion and atomistic scales
SDBW04 23rd June 2016
09:45 to 10:30
Denis Grebenkov Rigorous results on first-passage times for surface-mediated diffusion
SDBW04 23rd June 2016
11:00 to 11:45
Scott McKinley Anomalous Diffusion and Random Encounters in Living Systems
SDBW04 23rd June 2016
11:45 to 12:30
Ruth Baker tbaCell biology processes: model building and validation using quantitative data
SDBW04 23rd June 2016
14:00 to 14:45
Julien Berro Quantitative approaches to unravel the molecular mechanisms of clathrin-mediated endocytosis
SDBW04 23rd June 2016
14:45 to 15:30
Lei Zhang Noise Attenuation during the Development of Spatial Pattern
SDBW04 23rd June 2016
16:00 to 16:45
Jonathan Wattis Dynamics of telomere loss and telomere clustering
SDBW04 24th June 2016
09:00 to 09:45
Paul Bressloff Diffusion in randomly switching environments
SDBW04 24th June 2016
09:45 to 10:30
Heinz Koeppl Statistical inference of single-cell and single-molecule dynamics
SDBW04 24th June 2016
11:00 to 11:45
Assaf Amitai Changes in local chromatin structure during homology search: effects of local contacts on search time
SDBW04 24th June 2016
11:45 to 12:30
David Holcman Analysis of electrodiffusion in dendritic spines for synaptic transmission
University of Cambridge Research Councils UK
    Clay Mathematics Institute London Mathematical Society NM Rothschild and Sons