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Seminars (SDB)

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Event When Speaker Title Presentation Material
SDB 12th January 2016
15:00 to 16:00
Ulrich Dobramysl Role and dynamics of cytoskeletal actin bundles
SDB 13th January 2016
15:00 to 16:00
Karen Lipkow Cellular Systems Biology of Chromosome Dynamics
SDBW01 18th January 2016
11:45 to 12:30
Radek Erban, David Holcman, Samuel Isaacson, Konstantinos Zygalakis Eight Open Problems
SDBW01 18th January 2016
13:30 to 14:15
Jasmine Foo Field cancerization and recurrence in head and neck squamous cell carcinoma
SDBW01 18th January 2016
14:15 to 15:00
Blerta Shtylla Mathematical modeling of cellular nano machines
SDBW01 18th January 2016
15:30 to 16:15
Des Higham Efficiency of Stochastic Simulations
SDBW01 19th January 2016
09:00 to 09:45
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
09:45 to 10:30
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
11:00 to 11:45
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
11:45 to 12:30
Darren Wilkinson Linking stochastic dynamic biological models to data: Bayesian inference for parameters and structure
SDBW01 19th January 2016
13:30 to 14:15
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
14:15 to 15:00
Linda Petzold A Spatial Stochastic Model of Cell Polarization
SDBW01 19th January 2016
15:30 to 16:15
Peter Swain Identifying sources of variation in biochemical networks
SDBW01 20th January 2016
09:00 to 09:45
Johan Paulsson Exploiting single-cell fluctuations
SDBW01 20th January 2016
09:45 to 10:30
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 20th January 2016
11:00 to 11:45
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 20th January 2016
11:45 to 12:30
Raymond Goldstein The Stochastic Nonlinear Dynamics of Eukaryotic Flagella
SDBW01 20th January 2016
13:30 to 14:15
Christof Schuette Modelling Cellular Reaction-Diffusion Kinetics
SDBW01 20th January 2016
14:15 to 15:00
Ben Simons Tracing the cellular basis of epidermal maintenance and cancer
SDBW01 20th January 2016
15:30 to 16:15
Scott McKinley Anomalous Diffusion and Random Encounters in Biological Fluids
SDBW01 21st January 2016
09:00 to 09:45
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 21st January 2016
09:45 to 10:30
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 21st January 2016
11:00 to 11:45
David Holcman Tutorial C: Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes
SDBW01 21st January 2016
11:45 to 12:30
Rachel Kuske Noise-generated mixed-mode oscillations
SDBW01 21st January 2016
13:30 to 14:15
Ruth Baker Multi-level Monte Carlo: adaptive algorithms and distribution estimation
SDBW01 21st January 2016
14:15 to 15:00
Neil Dalchau Performing computation with DNA
SDBW01 21st January 2016
15:30 to 16:15
Stefan Klumpp Aspects of bacterial persistence
SDBW01 22nd January 2016
09:00 to 09:45
David Holcman Tutorial C: Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes
SDBW01 22nd January 2016
09:45 to 10:30
David Holcman Tutorial C: Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes
SDBW01 22nd January 2016
11:00 to 11:45
David Holcman Tutorial C: Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes
SDBW01 22nd January 2016
11:45 to 12:30
Mike Giles Multilevel Monte Carlo methods
SDB 26th January 2016
15:00 to 16:00
Grant Lythe Stochastic modelling and immunology
SDB 27th January 2016
15:00 to 16:00
Steve Andrews Open problems in stochastic cell biology: information transfer, macromolecular crowding, and filament simulation
SDB 29th January 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 2nd February 2016
15:00 to 16:00
Pietro Cicuta Subdiffusive fluctuations in bacterial chromosomes
SDB 3rd February 2016
15:00 to 16:00
Konstantinos Zygalakis Hybrid modelling of stochastic chemical kinetics
SDB 5th February 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 9th February 2016
15:00 to 16:00
Yongzheng Sun Influence of noise and time delay on the collective behavior of self-propelled particles system
SDB 10th February 2016
15:00 to 16:00
Bence Mélykúti Equilibrium distributions of simple biochemical reaction systems for time-scale separation in stochastic reaction networks
SDB 12th February 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 16th February 2016
15:00 to 16:00
Framework for Construction of Caricature Chemical Reaction Systems
SDB 17th February 2016
15:00 to 16:00
Omer Dushek A novel biophysical method for the study of tethered signalling reactions
SDB 23rd February 2016
15:00 to 16:00
Grant Lythe Stochastic modelling and immunology
SDB 24th February 2016
15:00 to 16:00
Krasimira Tsaneva Modelling gonadotrophin-releasing hormone signalling: dynamics, noise and reliability
SDB 26th February 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 4th March 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 8th March 2016
15:00 to 16:00
Mark Flegg Stochastic simulation of high order molecular interactions with spatial resolution and individual molecule detail: A generalised Smoluchowski theory
SDB 9th March 2016
15:00 to 16:00
Andreas Hellander PyURDME, MOLNs and StochSS — from new algorithms for spatial stochastic simulation to large-scale distributed computational experiments in “the cloud"
SDB 11th March 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 15th March 2016
15:00 to 16:00
Shuohao Liao Tensor Methods for Parameter Estimation and Bifurcation Analysis of Stochastic Reaction Networks
SDB 16th March 2016
15:00 to 16:00
Romain Yvinec Stochastic coagulation-fragmentation models for the study of protein aggregation phenomena
SDB 18th March 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 21st March 2016
14:00 to 15:00
Stefan Hellander Reaction rates for nearest-neighbor reactions in the reaction-diffusion master equation
SDB 22nd March 2016
15:00 to 16:00
Julius Kirkegaard Stochastic Aspects of Choanoflagellates
SDB 29th March 2016
15:00 to 16:00
Peter Roland Kramer Stochastic Fluctuations in Suspensions of Swimming Microorganisms
SDB 30th March 2016
15:00 to 16:00
Sandro Azaele Stochastic Modeling of Species-Rich Ecosystems
SDBW03 4th April 2016
09:30 to 10:15
Thomas Kurtz Approximations for Markov chain models
SDBW03 4th April 2016
10:15 to 11:00
James Faeder Towards large scale models of biochemical networks
SDBW03 4th April 2016
11:30 to 12:15
Simon Cotter A constrained approach to the simulation and analysis of stochastic multiscale chemical kinetics
SDBW03 4th April 2016
14:00 to 14:45
Raul Fidel Tempone Efficient Simulation and Inference for Stochastic Reaction Networks
SDBW03 4th April 2016
14:45 to 15:30
Erkki Somersalo tba
SDBW03 5th April 2016
09:00 to 09:45
Rosalind Allen Inherent variability in the kinetics of amyloid fibril formation
SDBW03 5th April 2016
09:45 to 10:30
Muruhan Rathinam Analysis of Monte Carlo estimators for parametric sensitivities in stochastic chemical kinetics
SDBW03 5th April 2016
11:00 to 11:45
David Doty "No We Can't": Impossibility of efficient leader election by chemical reactions
SDBW03 5th April 2016
11:45 to 12:30
Jay Newby First-passage time to clear the way for receptor-ligand binding in a crowded environment
SDBW03 5th April 2016
14:00 to 14:45
John Albeck Linking dynamic signaling events within the same cell
SDBW03 5th April 2016
14:45 to 15:30
Aleksandra Walczak tba
SDBW03 5th April 2016
16:00 to 16:45
Vahid Shahrezaei Inference of size dependence of transcription parameters from single cell data using multi-scale models of gene expression
SDBW03 6th April 2016
09:00 to 09:45
Omer Dushek Cellular signalling in T cells is captured by a tractable modular phenotypic model
SDBW03 6th April 2016
09:45 to 10:30
Eric Deeds tba
SDBW03 6th April 2016
11:00 to 11:45
Carlos Lopez Intracellular signaling processes and cell decisions using stochastic algorithms
SDBW03 6th April 2016
11:45 to 12:30
Tomas Vejchodsky Tensor methods for higher-dimensional Fokker-Planck equation
SDBW03 7th April 2016
09:00 to 09:45
Pieter Rein ten Wolde Fundamental limits to transcriptional regulatory control
SDBW03 7th April 2016
09:45 to 10:30
Andrew Duncan Hybrid modelling of stochastic chemical kinetics
SDBW03 7th April 2016
11:00 to 11:45
Kevin Burrage Sampling Methods for Exploring Between Subject Variability in Cardiac Electrophysiology Experiments
SDBW03 7th April 2016
11:45 to 12:30
Vikram Sunkara Insights into the dynamics of Hybrid Methods through a range of biological examples. A hands on approach
SDBW03 7th April 2016
14:00 to 14:45
Carmen Molina-Paris A stochastic story of two receptors and two ligands
SDBW03 7th April 2016
14:45 to 15:30
Ankit Gupta Stability properties of stochastic biomolecular reaction networks: Analysis and Applications
SDBW03 7th April 2016
16:00 to 16:45
Mustafa Khammash Subtle is the noise, but malicious it is not: dynamic exploits of intracellular noise
SDBW03 8th April 2016
09:00 to 09:45
Yiannis Kaznessis Closure Scheme for Chemical Master Equations - Is the Gibbs entropy maximum for stochastic reaction networks at steady state?
SDBW03 8th April 2016
09:45 to 10:30
Darren Wilkinson Scalable algorithms for Markov process parameter inference
SDBW03 8th April 2016
11:00 to 11:45
Christian Ray Lineage as a conception of space in compartmental stochastic processes across cellular populations
SDBW03 8th April 2016
11:45 to 12:30
Ramon Grima The system-size expansion of the chemical master equation: developments in the past 5 years
SDB 12th April 2016
15:00 to 16:00
Yiannis Kaznessis Multiscale Models for New Antibiotic Technologies
SDB 13th April 2016
15:00 to 16:00
James Rothman On the Structural Biochemical Mechanism of Synaptic Neurotransmission in the Brain
SDB 15th April 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 19th April 2016
15:00 to 16:00
Bob Eisenberg Mathematics and physiology
SDB 22nd April 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 26th April 2016
15:00 to 16:00
André Leier The use of delays in modelling and simulation of biochemical reaction systems and exact model reduction
SDB 27th April 2016
15:00 to 16:00
Jay Newby Metastable dynamics: rare events in cell biology
SDB 28th April 2016
11:00 to 12:00
Colin Gillespie Efficient construction of optimal designs for stochastic kinetic models
SDB 29th April 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 4th May 2016
15:00 to 16:00
Chuan Xue Multiscale Modeling of Axonal Cytoskeleton Dynamics in Disease
SDB 5th May 2016
16:00 to 17:00
Tatiana T Marquez Lago Spatial stochastic models of cell polarity and personalized medicine
SDB 6th May 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 10th May 2016
15:00 to 16:00
German A. Enciso Absolute robustness in deterministic and stochastic chemical reaction networks
SDB 11th May 2016
10:00 to 13:00
Steve Andrews Smoldyn Tutorial
SDB 11th May 2016
15:00 to 16:00
Ralf Metzler Anomalous diffusion in biological membranes and their mathematical description
SDB 13th May 2016
11:00 to 12:00
John Fricks Time Series Analysis of Diffusion with Transient Binding
SDB 13th May 2016
14:30 to 15:30
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 17th May 2016
15:00 to 16:00
Jürgen Reingruber Modeling and stochastic analysis of autoregulation of the Krox20 transcription factor driving cellular diversification and hindbrain patterning
SDB 18th May 2016
15:00 to 16:00
Kevin Burrage What we have been doing while at INI for the last 5 weeks: a mathematical study on anomalous diffusion
SDB 19th May 2016
16:00 to 17:00
Dan Coombs Particle tracking to elucidate cell surface receptor motion and signalling
SDB 20th May 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 25th May 2016
15:00 to 16:00
John Tyson Getting Things Right in a Noisy Milieu: Stochastic Models of Cell Cycle Dynamics in Budding Yeast and Bacteria
SDB 27th May 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 31st May 2016
15:00 to 16:00
Stephen Smith Four arguments against the reaction-diffusion master equation (and one in its favour).
SDB 1st June 2016
15:00 to 16:00
Garyk Papoian Stochastic Mechanochemistry of the Eukaryotic Cytoskeleton
SDB 6th June 2016
15:00 to 16:00
Vahid Shahrezaei Multi-scale modelling of stochastic gene expression
SDB 8th June 2016
15:00 to 16:00
David Schnoerr Cox process representation and inference for stochastic reaction-diffusion processes
SDB 9th June 2016
16:00 to 17:00
Tuomas Knowles tba
SDB 13th June 2016
15:00 to 16:00
Justine Dattani tba
SDB 14th June 2016
11:00 to 12:30
Rothchild Lecture
SDB 14th June 2016
15:00 to 16:00
Markos A. Katsoulakis tba
SDB 15th June 2016
15:00 to 16:00
Kevin Lin tba
SDBW04 20th June 2016
09:45 to 10:30
Daniel Coombs Interpretation and modelling with super-resolution microscopy
SDBW04 20th June 2016
11:00 to 11:45
Nathanael Hoze Recovering a stochastic process from super-resolution noisy ensembles of single particle trajectories
SDBW04 20th June 2016
11:45 to 12:30
Maria Bruna Diffusion of finite-size particles and application to heterogeneous domains
SDBW04 20th June 2016
14:00 to 14:45
Stefan Engblom Stability and strong convergence in multiscale methods for spatial stochastic kinetics
SDBW04 20th June 2016
14:45 to 15:30
Radek Erban From molecular dynamics to Brownian dynamics
SDBW04 21st June 2016
09:00 to 09:45
Aleksandar Donev Fast Reactive Brownian Dynamics
SDBW04 21st June 2016
09:45 to 10:30
Konstantinos Spiliopoulos Metastability and Monte Carlo Methods for Multiscale Problems
SDBW04 21st June 2016
11:00 to 11:45
Frank Noe Interacting-Particle Reaction-Diffusion Simulations: Endocytosis
SDBW04 21st June 2016
11:45 to 12:30
Avrama Blackwell Computationally efficient simulation of signaling pathways underlying synaptic plasticity
SDBW04 21st June 2016
14:00 to 14:45
Andrew Rutenberg Models of Microtubule Acetylation
SDBW04 21st June 2016
14:45 to 15:30
Kevin Sanft Spatial simulation and analysis of actin filament dynamics and wave propagation
SDBW04 21st June 2016
16:00 to 16:45
Assaf Amitai Changes in local chromatin structure during homology search: effects of local contacts on search time
SDBW04 22nd June 2016
09:00 to 09:45
Tom Chou Path integral-based Bayesian inference of bond energy and mobility
SDBW04 22nd June 2016
09:45 to 10:30
Scott McKinley Anomalous Diffusion and Random Encounters in Living Systems
SDBW04 22nd June 2016
11:00 to 11:45
Kit Yates Developing PDE-compartment hybrid frameworks for modeling stochastic reaction-diffusion processes
SDBW04 22nd June 2016
11:45 to 12:30
Erik De Schutter Accurate Reaction-Diffusion Operator Splitting on Tetrahedral Meshes for Parallel Stochastic Molecular Simulations
SDBW04 23rd June 2016
09:00 to 09:45
Jun Allard Clustering of cell surface receptors: Simulating the mesoscale between reaction-diffusion and atomistic scales
SDBW04 23rd June 2016
09:45 to 10:30
Denis Grebenkov Rigorous results on first-passage times for surface-mediated diffusion
SDBW04 23rd June 2016
11:00 to 11:45
Zaida Luthey-Schulten Simulations of Cellular Processes: From Single Cells to Colonies
SDBW04 23rd June 2016
11:45 to 12:30
Ruth Baker tbaCell biology processes: model building and validation using quantitative data
SDBW04 23rd June 2016
14:00 to 14:45
Julien Berro Quantitative approaches to unravel the molecular mechanisms of clathrin-mediated endocytosis
SDBW04 23rd June 2016
14:45 to 15:30
Lei Zhang Noise Attenuation during the Development of Spatial Pattern
SDBW04 23rd June 2016
16:00 to 16:45
Jonathan Wattis Modelling the development of insulin resistance
SDBW04 24th June 2016
09:00 to 09:45
Paul Bressloff Diffusion in randomly switching environments
SDBW04 24th June 2016
09:45 to 10:30
Heinz Koeppl tba
SDBW04 24th June 2016
11:00 to 11:45
Ramon Grima Exact and approximate solutions for spatial stochastic models of biochemical systems
SDBW04 24th June 2016
11:45 to 12:30
William Hlavacek Epidermal growth factor receptor signaling exerts control over endosomal transport through activation of Rab5 and Rab7
University of Cambridge Research Councils UK
    Clay Mathematics Institute London Mathematical Society NM Rothschild and Sons