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Seminars (SDB)

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Event When Speaker Title Presentation Material
SDB 12th January 2016
15:00 to 16:00
Ulrich Dobramysl Role and dynamics of cytoskeletal actin bundles
SDB 13th January 2016
15:00 to 16:00
Karen Lipkow Cellular Systems Biology of Chromosome Dynamics
SDBW01 18th January 2016
11:45 to 12:30
Radek Erban, David Holcman, Samuel Isaacson, Konstantinos Zygalakis Eight Open Problems
SDBW01 18th January 2016
13:30 to 14:15
Jasmine Foo Field cancerization and recurrence in head and neck squamous cell carcinoma
SDBW01 18th January 2016
14:15 to 15:00
Blerta Shtylla Mathematical modeling of cellular nano machines
SDBW01 18th January 2016
15:30 to 16:15
Des Higham Efficiency of Stochastic Simulations
SDBW01 19th January 2016
09:00 to 09:45
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
09:45 to 10:30
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
11:00 to 11:45
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
11:45 to 12:30
Darren Wilkinson Linking stochastic dynamic biological models to data: Bayesian inference for parameters and structure
SDBW01 19th January 2016
13:30 to 14:15
David Anderson Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models)
SDBW01 19th January 2016
14:15 to 15:00
Linda Petzold A Spatial Stochastic Model of Cell Polarization
SDBW01 19th January 2016
15:30 to 16:15
Peter Swain Identifying sources of variation in biochemical networks
SDBW01 20th January 2016
09:00 to 09:45
Johan Paulsson Exploiting single-cell fluctuations
SDBW01 20th January 2016
09:45 to 10:30
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 20th January 2016
11:00 to 11:45
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 20th January 2016
11:45 to 12:30
Raymond Goldstein The Stochastic Nonlinear Dynamics of Eukaryotic Flagella
SDBW01 20th January 2016
13:30 to 14:15
Christof Schuette Modelling Cellular Reaction-Diffusion Kinetics
SDBW01 20th January 2016
14:15 to 15:00
Ben Simons Tracing the cellular basis of epidermal maintenance and cancer
SDBW01 20th January 2016
15:30 to 16:15
Scott McKinley Anomalous Diffusion and Random Encounters in Biological Fluids
SDBW01 21st January 2016
09:00 to 09:45
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 21st January 2016
09:45 to 10:30
Samuel Isaacson Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models)
SDBW01 21st January 2016
11:00 to 11:45
David Holcman Tutorial C: Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes
SDBW01 21st January 2016
11:45 to 12:30
Rachel Kuske Noise-generated mixed-mode oscillations
SDBW01 21st January 2016
13:30 to 14:15
Ruth Baker Multi-level Monte Carlo: adaptive algorithms and distribution estimation
SDBW01 21st January 2016
14:15 to 15:00
Neil Dalchau Performing computation with DNA
SDBW01 21st January 2016
15:30 to 16:15
Stefan Klumpp Aspects of bacterial persistence
SDBW01 22nd January 2016
09:00 to 09:45
David Holcman Tutorial C: Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes
SDBW01 22nd January 2016
09:45 to 10:30
David Holcman Tutorial C: Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes
SDBW01 22nd January 2016
11:00 to 11:45
David Holcman Tutorial C: Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes
SDBW01 22nd January 2016
11:45 to 12:30
Mike Giles Multilevel Monte Carlo methods
SDB 26th January 2016
15:00 to 16:00
Grant Lythe Stochastic modelling and immunology
SDB 27th January 2016
15:00 to 16:00
Steve Andrews Open problems in stochastic cell biology: information transfer, macromolecular crowding, and filament simulation
SDB 29th January 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 2nd February 2016
15:00 to 16:00
Pietro Cicuta Subdiffusive fluctuations in bacterial chromosomes
SDB 3rd February 2016
15:00 to 16:00
Konstantinos Zygalakis Hybrid modelling of stochastic chemical kinetics
SDB 5th February 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 9th February 2016
15:00 to 16:00
Yongzheng Sun Influence of noise and time delay on the collective behavior of self-propelled particles system
SDB 10th February 2016
15:00 to 16:00
Bence Mélykúti Equilibrium distributions of simple biochemical reaction systems for time-scale separation in stochastic reaction networks
SDB 12th February 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 16th February 2016
15:00 to 16:00
Framework for Construction of Caricature Chemical Reaction Systems
SDB 17th February 2016
15:00 to 16:00
Omer Dushek A novel biophysical method for the study of tethered signalling reactions
SDB 23rd February 2016
15:00 to 16:00
Grant Lythe Stochastic modelling and immunology
SDB 24th February 2016
15:00 to 16:00
Krasimira Tsaneva Modelling gonadotrophin-releasing hormone signalling: dynamics, noise and reliability
SDB 26th February 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 4th March 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 8th March 2016
15:00 to 16:00
Mark Flegg Stochastic simulation of high order molecular interactions with spatial resolution and individual molecule detail: A generalised Smoluchowski theory
SDB 9th March 2016
15:00 to 16:00
Andreas Hellander PyURDME, MOLNs and StochSS — from new algorithms for spatial stochastic simulation to large-scale distributed computational experiments in “the cloud"
SDB 11th March 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 15th March 2016
15:00 to 16:00
Shuohao Liao Tensor Methods for Parameter Estimation and Bifurcation Analysis of Stochastic Reaction Networks
SDB 16th March 2016
15:00 to 16:00
Romain Yvinec Stochastic coagulation-fragmentation models for the study of protein aggregation phenomena
SDB 18th March 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 21st March 2016
14:00 to 15:00
Stefan Hellander Reaction rates for nearest-neighbor reactions in the reaction-diffusion master equation
SDB 22nd March 2016
15:00 to 16:00
Julius Kirkegaard Stochastic Aspects of Choanoflagellates
SDB 29th March 2016
15:00 to 16:00
Peter Roland Kramer Stochastic Fluctuations in Suspensions of Swimming Microorganisms
SDB 30th March 2016
15:00 to 16:00
Sandro Azaele Stochastic Modeling of Species-Rich Ecosystems
SDBW03 4th April 2016
09:30 to 10:15
Thomas Kurtz Approximations for Markov chain models
SDBW03 4th April 2016
10:15 to 11:00
James Faeder Towards large scale models of biochemical networks
SDBW03 4th April 2016
11:30 to 12:15
Simon Cotter A constrained approach to the simulation and analysis of stochastic multiscale chemical kinetics
SDBW03 4th April 2016
14:00 to 14:45
Raul Fidel Tempone Efficient Simulation and Inference for Stochastic Reaction Networks
SDBW03 4th April 2016
14:45 to 15:30
Erkki Somersalo tba
SDBW03 5th April 2016
09:00 to 09:45
Rosalind Allen Inherent variability in the kinetics of amyloid fibril formation
SDBW03 5th April 2016
09:45 to 10:30
Muruhan Rathinam Analysis of Monte Carlo estimators for parametric sensitivities in stochastic chemical kinetics
SDBW03 5th April 2016
11:00 to 11:45
David Doty "No We Can't": Impossibility of efficient leader election by chemical reactions
SDBW03 5th April 2016
11:45 to 12:30
Jay Newby First-passage time to clear the way for receptor-ligand binding in a crowded environment
SDBW03 5th April 2016
14:00 to 14:45
John Albeck Linking dynamic signaling events within the same cell
SDBW03 5th April 2016
14:45 to 15:30
Aleksandra Walczak tba
SDBW03 5th April 2016
16:00 to 16:45
Vahid Shahrezaei Inference of size dependence of transcription parameters from single cell data using multi-scale models of gene expression
SDBW03 6th April 2016
09:00 to 09:45
Omer Dushek Cellular signalling in T cells is captured by a tractable modular phenotypic model
SDBW03 6th April 2016
09:45 to 10:30
Eric Deeds tba
SDBW03 6th April 2016
11:00 to 11:45
Carlos Lopez Intracellular signaling processes and cell decisions using stochastic algorithms
SDBW03 6th April 2016
11:45 to 12:30
Tomas Vejchodsky Tensor methods for higher-dimensional Fokker-Planck equation
SDBW03 7th April 2016
09:00 to 09:45
Pieter Rein ten Wolde Fundamental limits to transcriptional regulatory control
SDBW03 7th April 2016
09:45 to 10:30
Andrew Duncan Hybrid modelling of stochastic chemical kinetics
SDBW03 7th April 2016
11:00 to 11:45
Kevin Burrage Sampling Methods for Exploring Between Subject Variability in Cardiac Electrophysiology Experiments
SDBW03 7th April 2016
11:45 to 12:30
Vikram Sunkara Insights into the dynamics of Hybrid Methods through a range of biological examples. A hands on approach
SDBW03 7th April 2016
14:00 to 14:45
Carmen Molina-Paris A stochastic story of two receptors and two ligands
SDBW03 7th April 2016
14:45 to 15:30
Ankit Gupta Stability properties of stochastic biomolecular reaction networks: Analysis and Applications
SDBW03 7th April 2016
16:00 to 16:45
Mustafa Khammash Subtle is the noise, but malicious it is not: dynamic exploits of intracellular noise
SDBW03 8th April 2016
09:00 to 09:45
Yiannis Kaznessis Closure Scheme for Chemical Master Equations - Is the Gibbs entropy maximum for stochastic reaction networks at steady state?
SDBW03 8th April 2016
09:45 to 10:30
Darren Wilkinson Scalable algorithms for Markov process parameter inference
SDBW03 8th April 2016
11:00 to 11:45
Christian Ray Lineage as a conception of space in compartmental stochastic processes across cellular populations
SDBW03 8th April 2016
11:45 to 12:30
Ramon Grima The system-size expansion of the chemical master equation: developments in the past 5 years
SDB 12th April 2016
15:00 to 16:00
Yiannis Kaznessis Multiscale Models for New Antibiotic Technologies
SDB 13th April 2016
15:00 to 16:00
James Rothman On the Structural Biochemical Mechanism of Synaptic Neurotransmission in the Brain
SDB 15th April 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 19th April 2016
15:00 to 16:00
Bob Eisenberg Mathematics and physiology
SDB 22nd April 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 26th April 2016
15:00 to 16:00
André Leier The use of delays in modelling and simulation of biochemical reaction systems and exact model reduction
SDB 27th April 2016
15:00 to 16:00
Jay Newby Metastable dynamics: rare events in cell biology
SDB 28th April 2016
11:00 to 12:00
Colin Gillespie Efficient construction of optimal designs for stochastic kinetic models
SDB 29th April 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 3rd May 2016
15:00 to 16:00
Tatiana T Marquez Lago tba
SDB 4th May 2016
15:00 to 16:00
Chuan Xue Multiscale Modeling of Axonal Cytoskeleton Dynamics in Disease
SDB 6th May 2016
14:30 to 17:00
David Holcman Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology
SDB 10th May 2016
15:00 to 16:00
German A. Enciso Absolute robustness in deterministic and stochastic chemical reaction networks
SDB 11th May 2016
15:00 to 16:00
Ralf Metzler Anomalous diffusion in biological membranes and their mathematical description
SDB 17th May 2016
15:00 to 16:00
Jürgen Reingruber tba
SDB 18th May 2016
15:00 to 16:00
Kevin Burrage tba
SDB 24th May 2016
15:00 to 16:00
Vahid Shahrezaei Multi-scale modelling of stochastic gene expression
SDB 25th May 2016
15:00 to 16:00
John Tyson tba
SDB 31st May 2016
15:00 to 16:00
Stephen Smith Four arguments against the reaction-diffusion master equation (and one in its favour).
SDB 1st June 2016
15:00 to 16:00
Garyk Papoian Stochastic Mechanochemistry of the Eukaryotic Cytoskeleton
SDB 8th June 2016
15:00 to 16:00
David Schnoerr Cox process representation and inference for stochastic reaction-diffusion processes
SDB 14th June 2016
15:00 to 16:00
Markos A. Katsoulakis tba
SDB 15th June 2016
15:00 to 16:00
Kevin Lin tba
University of Cambridge Research Councils UK
    Clay Mathematics Institute London Mathematical Society NM Rothschild and Sons