|
SDB |
12th January 2016
15:00 to 16:00 |
Ulrich Dobramysl |
Role and dynamics of cytoskeletal actin bundles |
|
|
SDB |
13th January 2016
15:00 to 16:00 |
Karen Lipkow |
Cellular Systems Biology of Chromosome Dynamics |
|
|
SDBW01 |
18th January 2016
11:45 to 12:30 |
Radek Erban, David Holcman, Samuel Isaacson, Konstantinos Zygalakis |
Eight Open Problems |
 |
|
SDBW01 |
18th January 2016
13:30 to 14:15 |
Jasmine Foo |
Field cancerization and recurrence in head and neck squamous cell carcinoma |
|
|
SDBW01 |
18th January 2016
14:15 to 15:00 |
Blerta Shtylla |
Mathematical modeling of cellular nano machines |
|
|
SDBW01 |
18th January 2016
15:30 to 16:15 |
Des Higham |
Efficiency of Stochastic Simulations |
|
|
SDBW01 |
19th January 2016
09:00 to 09:45 |
David Anderson |
Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models) |
|
|
SDBW01 |
19th January 2016
09:45 to 10:30 |
David Anderson |
Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models) |
|
|
SDBW01 |
19th January 2016
11:00 to 11:45 |
David Anderson |
Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models) |
|
|
SDBW01 |
19th January 2016
11:45 to 12:30 |
Darren Wilkinson |
Linking stochastic dynamic biological models to data: Bayesian inference for parameters and structure |
|
|
SDBW01 |
19th January 2016
13:30 to 14:15 |
David Anderson |
Tutorial A: Stochastic Simulation of Models Arising in the Life Sciences I (non-spatial models) |
|
|
SDBW01 |
19th January 2016
14:15 to 15:00 |
Linda Petzold |
A Spatial Stochastic Model of Cell Polarization |
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|
SDBW01 |
19th January 2016
15:30 to 16:15 |
Peter Swain |
Identifying sources of variation in biochemical networks |
|
|
SDBW01 |
20th January 2016
09:00 to 09:45 |
Johan Paulsson |
Exploiting single-cell fluctuations |
|
|
SDBW01 |
20th January 2016
09:45 to 10:30 |
Samuel Isaacson |
Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models) |
|
|
SDBW01 |
20th January 2016
11:00 to 11:45 |
Samuel Isaacson |
Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models) |
|
|
SDBW01 |
20th January 2016
11:45 to 12:30 |
Raymond Goldstein |
The Stochastic Nonlinear Dynamics of Eukaryotic Flagella |
|
|
SDBW01 |
20th January 2016
13:30 to 14:15 |
Christof Schuette |
Modelling Cellular Reaction-Diffusion Kinetics |
|
|
SDBW01 |
20th January 2016
14:15 to 15:00 |
Ben Simons |
Tracing the cellular basis of epidermal maintenance and cancer |
|
|
SDBW01 |
20th January 2016
15:30 to 16:15 |
Scott McKinley |
Anomalous Diffusion and Random Encounters in Biological Fluids |
|
|
SDBW01 |
21st January 2016
09:00 to 09:45 |
Samuel Isaacson |
Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models) |
|
|
SDBW01 |
21st January 2016
09:45 to 10:30 |
Samuel Isaacson |
Tutorial B: Stochastic Simulation of Models Arising in the Life Sciences II (spatial models) |
|
|
SDBW01 |
21st January 2016
11:00 to 11:45 |
David Holcman |
Advanced Lecture1 (Part I): Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes |
|
|
SDBW01 |
21st January 2016
11:45 to 12:30 |
Rachel Kuske |
Noise-generated mixed-mode oscillations |
|
|
SDBW01 |
21st January 2016
13:30 to 14:15 |
Ruth Baker |
Multi-level Monte Carlo: adaptive algorithms and distribution estimation |
|
|
SDBW01 |
21st January 2016
14:15 to 15:00 |
Neil Dalchau |
Performing computation with DNA |
|
|
SDBW01 |
21st January 2016
15:30 to 16:15 |
Stefan Klumpp |
Aspects of bacterial persistence |
|
|
SDBW01 |
22nd January 2016
09:00 to 09:45 |
David Holcman |
Advanced Lecture 1 (Part II): Narrow escape theory, first passage time to a small hole: analytical theory of chemical reactions |
|
|
SDBW01 |
22nd January 2016
09:45 to 10:30 |
David Holcman |
Advanced Lecture 2-3: Narrow escape theory application to the analysis of super-resolution single particle trajectories, |
|
|
SDBW01 |
22nd January 2016
11:00 to 11:45 |
David Holcman |
Tutorial C: Narrow escape theory, first passage time to a small hole and applications to modelling cell biology processes |
|
|
SDBW01 |
22nd January 2016
11:45 to 12:30 |
Mike Giles |
Multilevel Monte Carlo methods |
|
|
SDB |
26th January 2016
15:00 to 16:00 |
Grant Lythe |
Stochastic modelling and immunology |
|
|
SDB |
27th January 2016
15:00 to 16:00 |
Steve Andrews |
Open problems in stochastic cell biology: information transfer, macromolecular crowding, and filament simulation |
|
|
SDB |
29th January 2016
14:30 to 17:00 |
David Holcman |
Lecture 1: Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology |
|
|
SDB |
2nd February 2016
15:00 to 16:00 |
Pietro Cicuta |
Subdiffusive fluctuations in bacterial chromosomes |
|
|
SDB |
3rd February 2016
15:00 to 16:00 |
Konstantinos Zygalakis |
Hybrid modelling of stochastic chemical kinetics |
|
|
SDB |
5th February 2016
14:30 to 17:00 |
David Holcman |
Lecture 2: Introduction to the stochastic integral and Ito calculus, |
|
|
SDB |
9th February 2016
15:00 to 16:00 |
Yongzheng Sun |
Influence of noise and time delay on the collective behavior of self-propelled particles system |
|
|
SDB |
10th February 2016
15:00 to 16:00 |
Bence Mélykúti |
Equilibrium distributions of simple biochemical reaction systems for time-scale separation in stochastic reaction networks |
|
|
SDB |
12th February 2016
14:30 to 17:00 |
David Holcman |
Stochastic modeling, asymptotics, simulations and data analysis of super-resolution trajectories: application to cellular biology |
|
|
SDB |
16th February 2016
15:00 to 16:00 |
|
Framework for Construction of Caricature Chemical Reaction Systems |
|
|
SDB |
17th February 2016
15:00 to 16:00 |
Omer Dushek |
A novel biophysical method for the study of tethered signalling reactions |
|
|
SDB |
23rd February 2016
15:00 to 16:00 |
Grant Lythe |
Stochastic modelling and immunology |
|
|
SDB |
24th February 2016
15:00 to 16:00 |
Krasimira Tsaneva |
Modelling gonadotrophin-releasing hormone signalling: dynamics, noise and reliability |
|
|
SDB |
26th February 2016
14:30 to 17:00 |
David Holcman |
Lecture 4 |
|
|
SDB |
4th March 2016
14:30 to 17:00 |
David Holcman |
Lecture 5: (U. of Cambridge): Activation escape through a potential well. |
|
|
SDB |
8th March 2016
15:00 to 16:00 |
Mark Flegg |
Stochastic simulation of high order molecular interactions with spatial resolution and individual molecule detail: A generalised Smoluchowski theory |
|
|
SDB |
9th March 2016
15:00 to 16:00 |
Andreas Hellander |
PyURDME, MOLNs and StochSS — from new algorithms for spatial stochastic simulation to large-scale distributed computational experiments in “the cloud" |
|
|
SDB |
11th March 2016
14:30 to 17:00 |
David Holcman |
No lecture |
|
|
SDB |
15th March 2016
15:00 to 16:00 |
Shuohao Liao |
Tensor Methods for Parameter Estimation and Bifurcation Analysis of Stochastic Reaction Networks |
|
|
SDB |
16th March 2016
15:00 to 16:00 |
Romain Yvinec |
Stochastic coagulation-fragmentation models for the study of protein aggregation phenomena |
|
|
SDB |
18th March 2016
14:30 to 17:00 |
David Holcman |
Lecture 7: (U. of Cambridge): Additive property of the MFPT, Fokker-Planck with a killing term, Non-Poissonnian escape |
|
|
SDB |
21st March 2016
14:00 to 15:00 |
Stefan Hellander |
Reaction rates for nearest-neighbor reactions in the reaction-diffusion master equation |
|
|
SDB |
22nd March 2016
15:00 to 16:00 |
Julius Kirkegaard |
Stochastic Aspects of Choanoflagellates |
|
|
SDB |
29th March 2016
15:00 to 16:00 |
Peter Roland Kramer |
Stochastic Fluctuations in Suspensions of Swimming Microorganisms |
|
|
SDB |
30th March 2016
15:00 to 16:00 |
Sandro Azaele |
Stochastic Modeling of Species-Rich Ecosystems |
|
|
SDBW03 |
4th April 2016
09:30 to 10:15 |
Thomas Kurtz |
Approximations for Markov chain models |
|
|
SDBW03 |
4th April 2016
10:15 to 11:00 |
James Faeder |
Towards large scale models of biochemical networks |
|
|
SDBW03 |
4th April 2016
11:30 to 12:15 |
Simon Cotter |
A constrained approach to the simulation and analysis of stochastic multiscale chemical kinetics |
|
|
SDBW03 |
4th April 2016
14:00 to 14:45 |
Raul Fidel Tempone |
Efficient Simulation and Inference for Stochastic Reaction Networks |
|
|
SDBW03 |
4th April 2016
14:45 to 15:30 |
Erkki Somersalo |
tba |
|
|
SDBW03 |
5th April 2016
09:00 to 09:45 |
Rosalind Allen |
Inherent variability in the kinetics of amyloid fibril formation |
|
|
SDBW03 |
5th April 2016
09:45 to 10:30 |
Muruhan Rathinam |
Analysis of Monte Carlo estimators for parametric sensitivities in stochastic chemical kinetics |
|
|
SDBW03 |
5th April 2016
11:00 to 11:45 |
David Doty |
"No We Can't": Impossibility of efficient leader election by chemical reactions |
|
|
SDBW03 |
5th April 2016
11:45 to 12:30 |
Jay Newby |
First-passage time to clear the way for receptor-ligand binding in a crowded environment |
|
|
SDBW03 |
5th April 2016
14:00 to 14:45 |
John Albeck |
Linking dynamic signaling events within the same cell |
|
|
SDBW03 |
5th April 2016
14:45 to 15:30 |
Aleksandra Walczak |
tba |
|
|
SDBW03 |
5th April 2016
16:00 to 16:45 |
Vahid Shahrezaei |
Inference of size dependence of transcription parameters from single cell data using multi-scale models of gene expression |
|
|
SDBW03 |
6th April 2016
09:00 to 09:45 |
Omer Dushek |
Cellular signalling in T cells is captured by a tractable modular phenotypic model |
|
|
SDBW03 |
6th April 2016
09:45 to 10:30 |
Eric Deeds |
tba |
|
|
SDBW03 |
6th April 2016
11:00 to 11:45 |
Carlos Lopez |
Intracellular signaling processes and cell decisions using stochastic algorithms |
|
|
SDBW03 |
6th April 2016
11:45 to 12:30 |
Tomas Vejchodsky |
Tensor methods for higher-dimensional Fokker-Planck equation |
|
|
SDBW03 |
7th April 2016
09:00 to 09:45 |
Pieter Rein ten Wolde |
Fundamental limits to transcriptional regulatory control |
|
|
SDBW03 |
7th April 2016
09:45 to 10:30 |
Andrew Duncan |
Hybrid modelling of stochastic chemical kinetics |
|
|
SDBW03 |
7th April 2016
11:00 to 11:45 |
Kevin Burrage |
Sampling Methods for Exploring Between Subject Variability in Cardiac Electrophysiology Experiments |
|
|
SDBW03 |
7th April 2016
11:45 to 12:30 |
Vikram Sunkara |
Insights into the dynamics of Hybrid Methods through a range of biological examples. A hands on approach |
|
|
SDBW03 |
7th April 2016
14:00 to 14:45 |
Carmen Molina-Paris |
A stochastic story of two receptors and two ligands |
|
|
SDBW03 |
7th April 2016
14:45 to 15:30 |
Ankit Gupta |
Stability properties of stochastic biomolecular reaction networks: Analysis and Applications |
|
|
SDBW03 |
7th April 2016
16:00 to 16:45 |
Mustafa Khammash |
Subtle is the noise, but malicious it is not: dynamic exploits of intracellular noise |
|
|
SDBW03 |
8th April 2016
09:00 to 09:45 |
Yiannis Kaznessis |
Closure Scheme for Chemical Master Equations - Is the Gibbs entropy maximum for stochastic reaction networks at steady state? |
|
|
SDBW03 |
8th April 2016
09:45 to 10:30 |
Darren Wilkinson |
Scalable algorithms for Markov process parameter inference |
|
|
SDBW03 |
8th April 2016
11:00 to 11:45 |
Christian Ray |
Lineage as a conception of space in compartmental stochastic processes across cellular populations |
|
|
SDBW03 |
8th April 2016
11:45 to 12:30 |
Ramon Grima |
The system-size expansion of the chemical master equation: developments in the past 5 years |
|
|
SDB |
12th April 2016
15:00 to 16:00 |
Yiannis Kaznessis |
Multiscale Models for New Antibiotic Technologies |
|
|
SDB |
13th April 2016
15:00 to 16:00 |
James Rothman |
On the Structural Biochemical Mechanism of Synaptic Neurotransmission in the Brain |
|
|
SDB |
15th April 2016
14:30 to 17:00 |
David Holcman |
Lecture 8: (U. of Cambridge): Oscillatory escape: a Non-Poissonnian escape process |
|
|
SDB |
19th April 2016
15:00 to 16:00 |
Bob Eisenberg |
Mathematics and physiology |
|
|
SDB |
22nd April 2016
14:30 to 17:00 |
David Holcman |
Lecture 9: (U. of Cambridge): Oscillatory escape: a Non-Poissonnian escape process |
|
|
SDB |
26th April 2016
15:00 to 16:00 |
André Leier |
The use of delays in modelling and simulation of biochemical reaction systems and exact model reduction |
|
|
SDB |
27th April 2016
15:00 to 16:00 |
Jay Newby |
Metastable dynamics: rare events in cell biology |
|
|
SDB |
28th April 2016
11:00 to 12:00 |
Colin Gillespie |
Efficient construction of optimal designs for stochastic kinetic models |
|
|
SDB |
29th April 2016
14:30 to 17:00 |
David Holcman |
Lecture 10: (U. of Cambridge): Escape through a cusp. Applications to diffusion in a crowded membrane |
|
|
SDB |
4th May 2016
15:00 to 16:00 |
Chuan Xue |
Multiscale Modeling of Axonal Cytoskeleton Dynamics in Disease |
|
|
SDB |
5th May 2016
16:00 to 17:00 |
Tatiana T Marquez Lago |
Spatial stochastic models of cell polarity and personalized medicine |
|
|
SDB |
6th May 2016
14:30 to 17:00 |
David Holcman |
Lecture 11: (U. of Cambridge): statistics and analysis of super-resolution Single Particle trajectories. |
|
|
SDB |
10th May 2016
15:00 to 16:00 |
German A. Enciso |
Absolute robustness in deterministic and stochastic chemical reaction networks |
|
|
SDB |
11th May 2016
10:00 to 13:00 |
Steve Andrews |
Smoldyn Tutorial |
|
|
SDB |
11th May 2016
15:00 to 16:00 |
Ralf Metzler |
Anomalous diffusion in biological membranes and their mathematical description |
|
|
SDB |
13th May 2016
11:00 to 12:00 |
John Fricks |
Time Series Analysis of Diffusion with Transient Binding |
|
|
SDB |
13th May 2016
14:30 to 15:30 |
David Holcman |
Lecture 12: (U. of Cambridge): Stochastic chemical reactions: modelling and analysis |
|
|
SDB |
17th May 2016
15:00 to 16:00 |
Jürgen Reingruber |
Modeling and stochastic analysis of autoregulation of the Krox20 transcription factor driving cellular diversification and hindbrain patterning |
|
|
SDB |
18th May 2016
15:00 to 16:00 |
Kevin Burrage |
What we have been doing while at INI for the last 5 weeks: a mathematical study on anomalous diffusion |
|
|
SDB |
19th May 2016
16:00 to 17:00 |
Daniel Coombs |
Particle tracking to elucidate cell surface receptor motion and signalling |
|
|
SDB |
20th May 2016
14:30 to 17:00 |
David Holcman |
Lecture 13: (U. of Cambridge): Stochastic biology: stochastic telomere model and Rouse polymer model. |
|
|
SDB |
25th May 2016
15:00 to 16:00 |
John Tyson |
Getting Things Right in a Noisy Milieu: Stochastic Models of Cell Cycle Dynamics in Budding Yeast and Bacteria |
|
|
SDB |
27th May 2016
14:30 to 17:00 |
David Holcman |
Lecture 14: (U. of Cambridge): Anomalous diffusion for a monomer, mean time for a polymer to loop. |
|
|
SDB |
31st May 2016
15:00 to 16:00 |
Stephen Smith |
Four arguments against the reaction-diffusion master equation (and one in its favour). |
|
|
SDB |
1st June 2016
15:00 to 16:00 |
Garegin Papoian |
Stochastic Mechanochemistry of the Eukaryotic Cytoskeleton |
|
|
SDB |
6th June 2016
15:00 to 16:00 |
Vahid Shahrezaei |
Multi-scale modelling of stochastic gene expression |
|
|
SDB |
7th June 2016
15:00 to 16:00 |
André Leier |
Stochastic membrane processes in biomedicine |
|
|
SDB |
8th June 2016
15:00 to 16:00 |
David Schnoerr |
Cox process representation and inference for stochastic reaction-diffusion processes |
|
|
SDB |
9th June 2016
16:00 to 17:00 |
Tuomas Knowles |
Kinetics of filamentous protein self-assembly |
|
|
SDB |
10th June 2016
11:00 to 12:00 |
Jonathan Mattingly |
Scaling limits of a model for selection at two scales Joint with Shishi Luo |
|
|
SDB |
13th June 2016
15:00 to 16:00 |
Justine Dattani |
Stochastic models of gene transcription with upstream drives: Exact solution and sample path characterisation |
|
|
SDB |
14th June 2016
11:00 to 12:00 |
Ben O'Shaughnessy |
Mechanics of cell division by the actomyosin contractile ring |
|
|
SDB |
14th June 2016
15:00 to 16:00 |
Markos A. Katsoulakis |
Path-space information metrics for uncertainty quantification and coarse-graining of molecular systems |
|
|
SDB |
15th June 2016
15:00 to 16:00 |
Kevin Lin |
An analysis of implicit samplers in the small-noise limit |
|
|
SDB |
16th June 2016
11:00 to 12:00 |
Bence Mélykúti |
Cross-contamination rate estimation for digital PCR in lab-on-a-chip microfluidic devices |
|
|
SDB |
17th June 2016
14:15 to 17:00 |
David Holcman |
Lecture 15 (University of Cambrdige). Polymer model, mean looping time and interpretation of Hi-C data (Enounter frequencies data) |
|
|
SDBW04 |
20th June 2016
09:45 to 10:30 |
Daniel Coombs |
Interpretation and modelling with super-resolution microscopy |
|
|
SDBW04 |
20th June 2016
11:00 to 11:45 |
Nathanael Hoze |
Recovering a stochastic process from super-resolution noisy ensembles of single particle trajectories |
|
|
SDBW04 |
20th June 2016
11:45 to 12:30 |
Maria Bruna |
Diffusion of finite-size particles and application to heterogeneous domains |
|
|
SDBW04 |
20th June 2016
14:00 to 14:45 |
Stefan Engblom |
Stability and strong convergence in multiscale methods for spatial stochastic kinetics |
|
|
SDBW04 |
20th June 2016
14:45 to 15:30 |
Radek Erban |
From molecular dynamics to Brownian dynamics |
|
|
SDBW04 |
20th June 2016
16:00 to 16:45 |
Ramon Grima |
Exact and approximate solutions for spatial stochastic models of biochemical systems |
|
|
SDBW04 |
21st June 2016
09:00 to 09:45 |
Aleksandar Donev |
Fast Reactive Brownian Dynamics |
|
|
SDBW04 |
21st June 2016
09:45 to 10:30 |
Konstantinos Spiliopoulos |
Metastability and Monte Carlo Methods for Multiscale Problems |
|
|
SDBW04 |
21st June 2016
11:00 to 11:45 |
Frank Noe |
Interacting-Particle Reaction-Diffusion Simulations: Endocytosis |
|
|
SDBW04 |
21st June 2016
11:45 to 12:30 |
Avrama Blackwell |
Computationally efficient simulation of signaling pathways underlying synaptic plasticity |
|
|
SDBW04 |
21st June 2016
14:00 to 14:45 |
Andrew Rutenberg |
Models of Microtubule Acetylation |
|
|
SDBW04 |
21st June 2016
14:45 to 15:30 |
Kevin Sanft |
Spatial simulation and analysis of actin filament dynamics and wave propagation |
|
|
SDBW04 |
21st June 2016
16:00 to 17:00 |
Yannis Kevrekidis |
Rothschild Lecture: Mathematics for data-driven modeling - The science of crystal balls |
|
|
SDBW04 |
22nd June 2016
09:00 to 09:45 |
Tom Chou |
Path integral-based Bayesian inference of bond energy and mobility |
|
|
SDBW04 |
22nd June 2016
09:45 to 10:30 |
Zaida Luthey-Schulten |
Simulations of Cellular Processes: From Single Cells to Colonies |
|
|
SDBW04 |
22nd June 2016
11:00 to 11:45 |
Kit Yates |
Developing PDE-compartment hybrid frameworks for modeling stochastic reaction-diffusion processes |
|
|
SDBW04 |
22nd June 2016
11:45 to 12:30 |
Erik De Schutter |
Accurate Reaction-Diffusion Operator Splitting on Tetrahedral Meshes for Parallel Stochastic Molecular Simulations |
|
|
SDBW04 |
23rd June 2016
09:00 to 09:45 |
Jun Allard |
Clustering of cell surface receptors: Simulating the mesoscale between reaction-diffusion and atomistic scales |
|
|
SDBW04 |
23rd June 2016
09:45 to 10:30 |
Denis Grebenkov |
Rigorous results on first-passage times for surface-mediated diffusion |
|
|
SDBW04 |
23rd June 2016
11:00 to 11:45 |
Scott McKinley |
Anomalous Diffusion and Random Encounters in Living Systems |
|
|
SDBW04 |
23rd June 2016
11:45 to 12:30 |
Ruth Baker |
tbaCell biology processes: model building and validation using quantitative data |
|
|
SDBW04 |
23rd June 2016
14:00 to 14:45 |
Julien Berro |
Quantitative approaches to unravel the molecular mechanisms of clathrin-mediated endocytosis |
|
|
SDBW04 |
23rd June 2016
14:45 to 15:30 |
Lei Zhang |
Noise Attenuation during the Development of Spatial Pattern |
|
|
SDBW04 |
23rd June 2016
16:00 to 16:45 |
Jonathan Wattis |
Dynamics of DNA base-pair breathing, telomere loss and telomere clustering |
|
|
SDBW04 |
24th June 2016
09:00 to 09:45 |
Paul Bressloff |
Diffusion in randomly switching environments |
|
|
SDBW04 |
24th June 2016
09:45 to 10:30 |
Heinz Koeppl |
Statistical inference of single-cell and single-molecule dynamics |
|
|
SDBW04 |
24th June 2016
11:00 to 11:45 |
Assaf Amitai |
Changes in local chromatin structure during homology search: effects of local contacts on search time |
|
|
SDBW04 |
24th June 2016
11:45 to 12:30 |
David Holcman |
Advanced Lecture (U. of Cambridge): Analysis of electrodiffusion in dendritic spines for synaptic transmission |
|
