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Seminars (TODW02)

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Event When Speaker Title Presentation Material
TODW02 3rd September 2012
09:10 to 09:50
Chromatin Compaction: A Modeling Exploration of Fiber Hetergeoneity and Linker Histone Influence
TODW02 3rd September 2012
10:10 to 10:50
The topological equivalence of the yeast chromosome centromere and the yeast plasmid partitioning locus
TODW02 3rd September 2012
10:50 to 11:30
How the genome folds
TODW02 3rd September 2012
11:30 to 12:10
L Mirny The role of topological constraints on condensed polymers and DNA in human cells
TODW02 3rd September 2012
13:30 to 14:10
Large scale organization of chromatin
TODW02 3rd September 2012
14:10 to 14:50
S Levene All Good Things Must Bend: the Energetics of DNA Shape and Flexibility in Biological Assemblies
TODW02 3rd September 2012
15:20 to 15:40
Structure meets function at the mouse X chromosome inactivation center
TODW02 3rd September 2012
15:40 to 16:00
F Maggioni Modeling chromatin fibre folding for human embryonic stem cells and cancer cells
TODW02 3rd September 2012
16:00 to 16:20
A Rosa Three-dimensional conformations of entangled ring polymers in solution
TODW02 3rd September 2012
16:20 to 17:00
N Kleckner How E.coli organizes and segregates its chromosome
TODW02 4th September 2012
08:30 to 09:10
A tangled problem: the structure,function and folding of knotted proteins
TODW02 4th September 2012
09:10 to 09:50
Knotted and unknotted proteins: a comparative study (*)
TODW02 4th September 2012
10:10 to 10:50
M Cieplak Topological features in stretching of proteins
TODW02 4th September 2012
10:50 to 11:30
Conservation of complex knotting and slipknotting patterns in proteins
TODW02 4th September 2012
11:30 to 11:50
Amino acid patterns for protein folding
TODW02 4th September 2012
11:50 to 12:10
P Szymczak How to untie it-translocation of a knotted protein through a pore
TODW02 4th September 2012
13:30 to 14:10
Computer simulations of knotted DNA and proteins
TODW02 4th September 2012
14:10 to 14:50
Knots confined to tubes in the simple cubic lattice
TODW02 4th September 2012
15:20 to 15:40
Simulations of cyclic and linear DNA chains moderately and strongly confined in nanochannels
TODW02 4th September 2012
15:40 to 16:00
Diffusion dynamics of circular DNA mini-rings in solution
TODW02 4th September 2012
16:00 to 16:20
Influence of topology in coarse-graining of polymer solutions
TODW02 4th September 2012
16:20 to 17:00
Locating knots and slipknots in open and closed macromolecules
TODW02 4th September 2012
17:00 to 17:40
E Rawdon Knotting of open chains, closed chains and proteins
TODW02 5th September 2012
08:30 to 09:10
Superhelically Driven Structural Transitions in Genomic DNA - Theoretical Analyses, Genomic Distributions and Roles in Regulation
TODW02 5th September 2012
09:10 to 09:50
Co-operative roles for DNA supercoiling and nucleoid-associated proteins in the regulation of bacterial transcription
TODW02 5th September 2012
10:10 to 10:50
Chromosomes as topological machines-the role of DNA thermodynamics
TODW02 5th September 2012
10:50 to 11:30
How DNA topology and DNA length affect the body's defense against nucleic acids of invading organisms in the blood
TODW02 5th September 2012
11:30 to 11:50
Twisted paths in Euclidean groups: Keeping track of total orientation while traversing DNA
TODW02 5th September 2012
11:50 to 12:10
R Cortini Chiral effects in DNA supercoiling
TODW02 5th September 2012
13:30 to 14:10
Sequence-Dependent Coarse-Grain Descriptions of DNA: models, methods and simulations
TODW02 5th September 2012
14:10 to 14:50
K Zakrzewska DNA recognition studied by molecular simulations
TODW02 5th September 2012
15:20 to 15:40
J Baxter The yeast Pif1 family helicase RRM3 promotes DNA unwinding during replisome swivelling
TODW02 5th September 2012
15:40 to 16:00
Denaturation transition of stretched DNA in the presence of DNA-binding ligands
TODW02 5th September 2012
16:00 to 16:20
Twist neutrality and topological aspects of nucleosomal DNA
TODW02 5th September 2012
16:20 to 17:00
D Swigon Dynamics of DNA supercoiling and knotting
TODW02 5th September 2012
17:00 to 17:40
W Olson Simulated looping propensities of protein-decorated DNA
TODW02 6th September 2012
09:10 to 09:50
A Maxwell DNA topology and the mechanism of type II DNA topoisomerases
TODW02 6th September 2012
10:10 to 10:50
Mechanistic studies of type IA topoisomerases
TODW02 6th September 2012
10:50 to 11:30
C Soteros Knot statistics and knot reduction for a lattice polygon model of local strand passage
TODW02 6th September 2012
11:30 to 11:50
Topo IV is the topoisomerase that knots and unknots sister duplexes during DNA replication
TODW02 6th September 2012
11:50 to 12:10
P Sulkowski Topological recursion and classification of multi-stranded biopolymer configurations
TODW02 6th September 2012
13:30 to 14:10
DNA in confined geometries: topology effects
TODW02 6th September 2012
14:10 to 14:50
A generic non-specific mechanism for the clustering of DNA and chromosome binding proteins
TODW02 7th September 2012
08:30 to 09:10
Topology of Xer site-specific recombination
TODW02 7th September 2012
09:10 to 09:50
I Grainge Simplification of topology during Xer-mediated recombination
TODW02 7th September 2012
10:10 to 10:50
Tangle analysis of protein-DNA complexes
TODW02 7th September 2012
10:50 to 11:30
DNA unknotting and unlinking
TODW02 7th September 2012
11:30 to 11:50
R Scharein TopoICE and other software tools for investigating topological problems in DNA
University of Cambridge Research Councils UK
    Clay Mathematics Institute London Mathematical Society NM Rothschild and Sons